Rachel Daniels, PhD

High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes; Nucleic Acids Research; (2025).

High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes; Unknown Source; (2024).

Challenges in identifying mRNA transcript starts and ends from long-read sequencing data; Genome Research; (2024).

Challenges in identifying mRNA transcript starts and ends from long-read sequencing data; Unknown Source; (2023).

R H: a genetic metric for measuring intrahost Plasmodium falciparum relatedness and distinguishing cotransmission from superinfection; PNAS Nexus; (2022).

Relevance of Higher-Order Epistasis in Drug Resistance; Molecular Biology and Evolution; (2021).

Genetic analysis reveals unique characteristics of Plasmodium falciparum parasite populations in Haiti; Malaria Journal; (2020).

Genetic Analysis Reveals Unique Characteristics of Plasmodium Falciparum Parasite Populations in Haiti; Unknown Source; (2020).

Genetic analysis reveals unique characteristics of Plasmodium falciparum parasite populations in Haiti; Unknown Source; (2020).

Genetic analysis reveals unique characteristics of Plasmodium falciparum parasite populations in Haiti; Unknown Source; (2020).

Evidence of non-Plasmodium falciparum malaria infection in Kédougou, Sénégal; Malaria Journal; (2017).

Plasmodium falciparumK76TpfcrtGene Mutations and Parasite Population Structure, Haiti, 2006–2009; Emerg. Infect. Dis.; (2016).

Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda; Scientific Reports; (2016).

Methods to Increase the Sensitivity of High Resolution Melting Single Nucleotide Polymorphism Genotyping in Malaria; JoVE; (2015).

The utility of genomic data forPlasmodium vivaxpopulation surveillance; Pathogens and Global Health; (2015).

RDTs as a source of DNA to study Plasmodium falciparum drug resistance in isolates from Senegal and the Comoros Islands; Malar J; (2015).

Development of a Single Nucleotide Polymorphism Barcode to Genotype Plasmodium vivax Infections; PLoS Negl Trop Dis; (2015).

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data; Malaria Journal; (2015).

Pre-amplification methods for tracking low-grade Plasmodium falciparum populations during scaled-up interventions in Southern Zambia; Malaria Journal; (2014).

Clonal Outbreak ofPlasmodium falciparumInfection in Eastern Panama; J Infect Dis.; (2014).

Polymorphism in dhfr/dhps genes, parasite density and ex vivo response to pyrimethamine in Plasmodium falciparum malaria parasites in Thies, Senegal; International Journal for Parasitology: Drugs and Drug Resistance; (2013).

Changes in drug sensitivity and anti-malarial drug resistance mutations over time among Plasmodium falciparum parasites in Senegal; Malaria Journal; (2013).

Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal; PLoS ONE; (2013).

Application of genomics to field investigations of malaria by the international centers of excellence for malaria research; Acta Tropica; (2012).

Population Genetics and Parasite Diversity; Evolution of Virulence in Eukaryotic Microbes; (2012).

Hybrid selection for sequencing pathogen genomes from clinical samples; Genome Biology; (2011).

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking; Malaria Journal; (2008).

Natural Products from isnA -Containing Biosynthetic Gene Clusters Recovered from the Genomes of Cultured and Uncultured Bacteria; J. Am. Chem. Soc.; (2007).